Expertise
Saltmarsh Ecology • Genomics • Bioinformatics • Evolution
As a postdoctoral researcher in the Fuller Evolutionary Biology Lab, I use genetic tools to study saltmarsh adaptations (namely salt tolerance) in songbirds. Tidal saltmarshes pose extreme adaptive challenges to avian populations, making them interesting systems from an evolutionary perspective. In addition, many of the bird populations restricted to tidal marshes are heavily fragmented and in rapid decline, making them of interest from a conservation perspective as well.
My goal as a researcher at the Cornell Lab is to use new genomic methods to identify local diversity and adaptive potential in these special saltmarsh populations and to aid in informing management efforts by defining units for conservation.
Education
Ph.D., University of New Hampshire
Beyond the Lab
When I am not working at the Lab, I love to garden and go on long hikes with my dogs.
Recent Publications
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https://www.birds.cornell.edu/home/wp-content/plugins/zotpress/
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Mikles, C. S., S. M. Aguillon, Y. L. Chan, P. Arcese, P. M. Benham, I. J. Lovette, and J. Walsh (2020).
Genomic differentiation and local adaptation on a microgeographic scale in a resident songbird. Molecular Ecology:mec.15647.
Walsh, J., S. M. Billerman, V. G. Rohwer, B. G. Butcher, and I. J. Lovette (2020).
Genomic and plumage variation across the controversial Baltimore and Bullock's Oriole hybrid zone. The Auk:ukaa044.
Aguillon, S. M., J. Walsh, and I. J. Lovette (2020).
Extensive hybridization reveals multiple coloration genes underlying a complex plumage phenotype. https://doi.org/10.1101/2020.07.10.197715
Pecl, G. T., J. Stuart-Smith, P. Walsh, D. J. Bray, M. Kusetic, M. Burgess, S. D. Frusher, D. C. Gledhill, O. George, G. Jackson, J. Keane, et al. (2019).
Redmap Australia: Challenges and successes with a large-scale citizen science-based approach to ecological monitoring and community engagement on climate change. Frontiers in Marine Science 6:349.
Walsh, J., G. V. Clucas, M. D. MacManes, W. K. Thomas, and A. I. Kovach (2019).
Divergent selection and drift shape the genomes of two avian sister species spanning a saline–freshwater ecotone. Ecology and Evolution 9:13477–13494.
Walsh, J., P. M. Benham, P. E. Deane-Coe, P. Arcese, B. G. Butcher, Y. L. Chan, Z. A. Cheviron, C. S. Elphick, A. I. Kovach, B. J. Olsen, W. G. Shriver, et al. (2019).
Genomics of rapid ecological divergence and parallel adaptation in four tidal marsh sparrows. Evolution Letters 3:324–338.
Walsh, J., A. I. Kovach, B. J. Olsen, W. G. Shriver, and I. J. Lovette (2019). [In press] Bidirectional adaptive introgression between two ecologically divergent sparrow species. Evolution.
Benvenuti, B., J. Walsh, K. M. O'Brien, and A. I. Kovach (2018).
Plasticity in nesting adaptations of a tidal marsh endemic bird. Ecology and Evolution 8:10780–10793.
Benvenuti, B., J. Walsh, K. M. O'Brien, M. J. Ducey, and A. I. Kovach (2018).
Annual variation in the offspring sex ratio of Saltmarsh Sparrows supports Fisher's hypothesis. The Auk 135:342–358.
Toews, D. P. L., J. Walsh, and L. Campagna (2018).
Population Genomics of Birds: Evolutionary History and Conservation. In Population Genomics: Wildlife. Springer International Publishing, Cham.
Walsh, J., W. G. Shriver, M. D. Correll, B. J. Olsen, C. S. Elphick, T. P. Hodgman, R. J. Rowe, K. M. O'Brien, and A. I. Kovach (2017).
Temporal shifts in the Saltmarsh–Nelson's Sparrow hybrid zone revealed by replicated demographic and genetic surveys. Conservation Genetics 18:453–466.
Walsh, J., I. J. Lovette, V. Winder, C. S. Elphick, B. J. Olsen, G. Shriver, and A. I. Kovach (2017).
Subspecies delineation amid phenotypic, geographic, and genetic discordance in a songbird. Molecular Ecology 26:1242–1255.
Walsh, J., B. J. Olsen, K. J. Ruskin, W. Gregory Shriver, K. M. O'Brien, and A. I. Kovach (2016).
Extrinsic and intrinsic factors influence fitness in an avian hybrid zone. Biological Journal of the Linnean Society. https://doi.org/10.1111/bij.12837
Walsh, J., R. J. Rowe, B. J. Olsen, W. G. Shriver, and A. I. Kovach (2016).
Genotype-environment associations support a mosaic hybrid zone between two tidal marsh birds. Ecology and Evolution 6:279–294.