K. Lisa Yang Center for Conservation Bioacoustics Publications

Aceves-Bueno, E., L. Davids, J. A. Rodriguez-Valencia, A. M. Jaramillo-Legorreta, E. Nieto-Garcia, G. Cárdenas-Hinojosa, E. Hidalgo-Pla, A. Bonilla-Garzón, A. J. Diaz-de-Leon, L. Rojas-Bracho, and M. A. Cisneros-Mata (2023). Derelict gear from an illegal fishery: Lessons from gear retrieval efforts in the Upper Gulf of California. Marine Policy 147:105387.

Barlow, D. R., H. Klinck, D. Ponirakis, T. A. Branch, and L. G. Torres (2023). Environmental conditions and marine heatwaves influence blue whale foraging and reproductive effort. Ecology and Evolution 13:e9770.

Brunk, K. M., R. J. Gutiérrez, M. Z. Peery, C. A. Cansler, S. Kahl, and C. M. Wood (2023). Quail on fire: changing fire regimes may benefit mountain quail in fire-adapted forests. Fire Ecology 19:19.

Clink, D. J., I. Kier, A. H. Ahmad, and H. Klinck (2023). A workflow for the automated detection and classification of female gibbon calls from long-term acoustic recordings. Frontiers in Ecology and Evolution 11.

Kennedy, A. G., A. H. Ahmad, H. Klinck, L. M. Johnson, and D. J. Clink (2023). Evidence for acoustic niche partitioning depends on the temporal scale in two sympatric Bornean hornbill species. Biotropica n/a.

Li, P., M. A. Roch, H. Klinck, E. Fleishman, D. Gillespie, E.-M. Nosal, Y. Shiu, and X. Liu (2023). Learning Stage-wise GANs for Whistle Extraction in Time-Frequency Spectrograms. IEEE Transactions on Multimedia:1–13.

McGinn, K., S. Kahl, M. Z. Peery, H. Klinck, and C. M. Wood (2023). Feature embeddings from the BirdNET algorithm provide insights into avian ecology. Ecological Informatics 74:101995.

Ramesh, V., P. Hariharan, V. A. Akshay, P. Choksi, S. Khanwilkar, R. DeFries, and V. V. Robin (2023). Using passive acoustic monitoring to examine the impacts of ecological restoration on faunal biodiversity in the Western Ghats. Biological Conservation 282:110071.

Rørstadbotnen, R. A., J. Eidsvik, L. Bouffaut, M. Landrø, J. Potter, K. Taweesintananon, S. Johansen, F. Storevik, J. Jacobsen, O. Schjelderup, S. Wienecke, et al. (2023). Simultaneous tracking of multiple whales using two fiber-optic cables in the Arctic. Frontiers in Marine Science 10.

Ross, S. R. P.-J., D. P. O'Connell, J. L. Deichmann, C. Desjonquères, A. Gasc, J. N. Phillips, S. S. Sethi, C. M. Wood, and Z. Burivalova (2023). Passive acoustic monitoring provides a fresh perspective on fundamental ecological questions. Functional Ecology 37:959–975.

Southall, B. L., D. Tollit, J. Amaral, C. W. Clark, and W. T. Ellison (2023). Managing human activity and marine mammals: A biologically based, relativistic risk assessment framework. Frontiers in Marine Science 10.

Taweesintananon, K., M. Landrø, J. R. Potter, S. E. Johansen, R. A. Rørstadbotnen, L. Bouffaut, H. J. Kriesell, J. K. Brenne, A. Haukanes, O. Schjelderup, and F. Storvik (2023). Distributed acoustic sensing of ocean-bottom seismo-acoustics and distant storms: A case study from Svalbard, Norway. GEOPHYSICS:1–65.

Tonetti, V., J. C. Pena, M. D. Scarpelli, L. S. Sugai, F. M. Barros, P. R. Anunciação, P. M. Santos, A. L. Tavares, and M. C. Ribeiro (2023). Landscape heterogeneity: concepts, quantification, challenges and future perspectives. Environmental Conservation:1–10.

Van Hoeck, R. V., T. J. Rowell, M. J. Dean, A. N. Rice, and S. M. Van Parijs (2023). Comparing Atlantic cod temporal spawning dynamics across a biogeographic boundary: insights from passive acoustic monitoring. Marine and Coastal Fisheries 15:e10226.

Vu, T. T., T. C. Nguyen, P. F. Doherty Jr, H. T. Nguyen, D. J. Clink, M. D. Nguyen, H. T. Dong, and T. T. Giang (2023). Using mobile smartphones and bioacoustics to monitor endangered bird species. Ibis n/a.

Wood, C. M., J. Champion, C. Brown, W. Brommelsiek, I. Laredo, R. Rogers, and P. Chaopricha (2023). Challenges and opportunities for bioacoustics in the study of rare species in remote environments. Conservation Science and Practice n/a:e12941.

Erb, W. M., and W. DePuy (2023). Hearing the forest through the trees: Sonic entanglements in Nusantara. Southeast Asia Program Spring 2023 Bulletin.

Wood, C. M. (2023). The Yosemite toad and the invisible mountains of the Sierra Nevada. The Snowboarder’s Journal 20.

Anunciação, P. R., L. S. M. Sugai, F. Martello, L. M. T. de Carvalho, and M. C. Ribeiro (2022). Estimating the diversity of tropical anurans in fragmented landscapes with acoustic monitoring: lessons from a sampling sufficiency perspective. Biodiversity and Conservation 31:3055–3074.

Arvind, C., V. Joshi, R. Charif, P. Jeganathan, and V. V. Robin (2022). Species detection framework using automated recording units: a case study of the Critically Endangered Jerdon's courser. Oryx:1–8.

Calsbeek, R., F. J. Zamora-Camacho, and L. B. Symes (2022). Individual contributions to group chorus dynamics influence access to mating opportunities in wood frogs. Ecology Letters. https://doi.org/10.1111/ele.14002

Comella, I., J. S. Tasirin, H. Klinck, L. M. Johnson, and D. J. Clink (2022). Investigating note repertoires and acoustic tradeoffs in the duet contributions of a basal haplorrhine primate. Frontiers in Ecology and Evolution 10.

Conant, P. C., P. Li, X. Liu, H. Klinck, E. Fleishman, D. Gillespie, E.-M. Nosal, and M. A. Roch (2022). Silbido profundo: An open source package for the use of deep learning to detect odontocete whistles. The Journal of the Acoustical Society of America 152:3800–3808.

Estabrook, B. J., J. T. Tielens, A. Rahaman, D. W. Ponirakis, C. W. Clark, and A. N. Rice (2022). Dynamic spatiotemporal acoustic occurrence of North Atlantic right whales in the offshore Rhode Island and Massachusetts Wind Energy Areas. Endangered Species Research 49:115–133.

Ghani, B., H. Klinck, and S. Hallerberg (2022). Classification of group-specific variations in songs within House Wren species using machine learning models. Ecological Informatics:101946.

Grueter, C. C., W. M. Erb, L. R. Ulibarri, and I. Matsuda (2022). Ecology and behaviour of odd-nosed colobines. In The Colobines: Natural History, Behaviour and Ecological Diversity. Cambridge University Press, pp. 156–185.

Hofstadter, D. F., N. F. Kryshak, C. M. Wood, B. P. Dotters, K. N. Roberts, K. G. Kelly, J. J. Keane, S. C. Sawyer, P. A. Shaklee, H. A. Kramer, M. Z. Gutiérrez, and M. Z. Peery (2022). Arresting the spread of invasive species in continental systems. Frontiers in Ecology and the Environment. https://doi.org/doi:10.1002/fee.2458

Joly, A., H. Goëau, S. Kahl, L. Picek, E. Cole, B. Deneu, M. Servajean, A. Durso, H. Glotin, R. Planqué, A. Navine, et al. (no date). Overview of LifeCLEF 2022: an evaluation of Machine-Learning based Species Identification and Species Distribution Prediction.

Kahl, S., A. Navine, T. Denton, H. Klinck, P. Hart, H. Glotin, H. Goëau, W.-P. Vellinga, R. Planqué, and A. Joly (2022). Overview of BirdCLEF 2022: Endangered bird species recognition in soundscape recordings. p. 1929.

Landrø, M., L. Bouffaut, H. J. Kriesell, J. R. Potter, R. A. Rørstadbotnen, K. Taweesintananon, S. E. Johansen, J. K. Brenne, A. Haukanes, O. Schjelderup, and F. Storvik (2022). Sensing whales, storms, ships and earthquakes using an Arctic fibre optic cable. Scientific Reports 12:19226.

Lau, A. R., M. Zafar, A. H. Ahmad, and D. J. Clink (2022). Investigating temporal coordination in the duet contributions of a pair-living small ape. Behavioral Ecology and Sociobiology 76:91.

Madhusudhana, S., G. Pavan, L. A. Miller, W. L. Gannon, A. Hawkins, C. Erbe, J. A. Hamel, and J. A. Thomas (2022). Choosing Equipment for Animal Bioacoustic Research. In Exploring Animal Behavior Through Sound: Volume 1: Methods (C. Erbe and J. A. Thomas, Editors). Springer International Publishing, Cham, pp. 37–85.

Oswald, J. N., C. Erbe, W. L. Gannon, S. Madhusudhana, and J. A. Thomas (2022). Detection and Classification Methods for Animal Sounds. In Exploring Animal Behavior Through Sound: Volume 1: Methods (C. Erbe and J. A. Thomas, Editors). Springer International Publishing, Cham, pp. 269–317.

Palmer, C. M., N. L. Wershoven, S. J. Martinson, H. M. ter Hofstede, W. J. Kress, and L. B. Symes (2022). Patterns of Herbivory in Neotropical Forest Katydids as Revealed by DNA Barcoding of Digestive Tract Contents. Diversity 14:152.

Palmer, K. J., G.-M. Wu, C. Clark, and H. Klinck (2022). Accounting for the Lombard effect in estimating the probability of detection in passive acoustic surveys: Applications for single sensor mitigation and monitoring. Journal of the Acoustical Society of America 151:67–79.

Parsons, M. J. G., T.-H. Lin, T. A. Mooney, C. Erbe, F. Juanes, M. Lammers, S. Li, S. Linke, A. Looby, S. L. Nedelec, I. Van Opzeeland, et al. (2022). Sounding the call for a global library of underwater biological sounds. Frontiers in Ecology and Evolution 10.

Popper, A. N., L. Hice-Dunton, E. Jenkins, D. M. Higgs, J. Krebs, A. Mooney, A. Rice, L. Roberts, F. Thomsen, K. Vigness-Raposa, D. Zeddies, and K. A. Williams (2022). Offshore wind energy development: Research priorities for sound and vibration effects on fishes and aquatic invertebrates. Journal of the Acoustic Society of America 151.

Rameau, A., K. Andreadis, V. Ganesan, M. S. Lachs, T. Rosen, F. Wang, A. Maddox, H. Klinck, S. M. Khosla, C. F. de Luzan, and S. Madhusudhana (2022). Acoustic screening of the "wet voice": proof of concept in an ex vivo canine laryngeal model. The Laryngoscope n/a.

Reid, D. S., C. M. Wood, S. A. Whitmore, W. J. Berigan, H. A. Kramer, N. F. Kryshak, J. J. Keane, S. C. Sawyer, R. J. Gutiérrez, H. Klinck, and M. Z. Peery (2022). Breeding status shapes territoriality and vocalization patterns in spotted owls. Journal of Avian Biology n/a:e02952.

Rice, A. N., S. C. Farina, A. J. Makowski, I. M. Kaatz, P. S. Lobel, W. E. Bemis, and A. H. Bass (2022). Evolutionary patterns in sound production across fishes. Ichthyology & Herpetology 110:1–12.

Swider, C. R., C. F. Gemelli, P. H. Wrege, and S. E. Parks (2022). Passive acoustic monitoring reveals behavioural response of African forest elephants to gunfire events. African Journal of Ecology n/a.

Symes, L. B., K. D. Kittelberger, S. M. Stone, R. T. Holmes, J. S. Jones, I. P. Castaneda Ruvalcaba, M. S. Webster, and M. P. Ayres (2022). Analytical approaches for evaluating passive acoustic monitoring data: A case study of avian vocalizations. Ecology and Evolution 12:e8797.

Tuia, D., B. Kellenberger, S. Beery, B. R. Costelloe, S. Zuffi, B. Risse, A. Mathis, M. W. Mathis, F. van Langevelde, T. Burghardt, R. Kays, et al. (2022). Perspectives in machine learning for wildlife conservation. Nature Communications 13:792.

Backhouse, F., A. H. Dalziell, R. D. Magrath, A. N. Rice, T. L. Crisologo, and J. A. Welbergen (2021). Differential geographic patterns in song components of male Albert's lyrebirds. Ecology and Evolution 11:2701–2716.

Bailey, H., A. D. Fandel, K. Silva, E. Gryzb, E. McDonald, A. L. Hoover, M. B. Ogburn, and A. N. Rice (2021). Identifying and predicting occurrence and abundance of a vocal animal species based on individually specific calls. Ecosphere 12:e03685.

Barlow, D. R., H. Klinck, D. Ponirakis, C. Garvey, and L. G. Torres (2021). Temporal and spatial lags between wind, coastal upwelling, and blue whale occurrence. Scientific Reports 11.

Barratt, C. D., J. D. Lester, P. Gratton, R. E. Onstein, A. K. Kalan, M. S. McCarthy, G. Bocksberger, L. C. White, L. Vigilant, P. Dieguez, B. Abdulai, et al. (2021). Quantitative estimates of glacial refugia for chimpanzees (Pan troglodytes) since the Last Interglacial (120,000 BP). American Journal of Primatology 83:e23320.

Clink, D., T. Groves, A. H. Ahmad, and H. Klinck (2021). Not by the light of the moon: Investigating circadian rhythms and environmental predictors of calling in Bornean great argus. PLoS ONE 16:e0246564.

Clink, D. J., M. Zafar, A. H. Ahmad, and A. R. Lau (2021). Limited evidence for individual signatures or site-level patterns of variation in male northern gray gibbon (Hylobates funereus) duet codas. International Journal of Primatology 42:896–914.

Clink, D. J., A. R. Lau, S. Kanthaswamy, L. M. Johnson, and K. L. Bales (2021). Moderate evidence for heritability in the duet contributions of a South American primate. Journal of Evolutionary Biology 35:51–63.

Cusack, C., S. A. Sethi, A. N. Rice, J. D. Warren, R. Fujita, J. Ingles, J. Flores, E. Garchitorena, and S. V. Mesa (2021). Marine ecotourism for small pelagics as a source of alternative income generating activities to fisheries in a tropical community. Biological Conservation 261:109242.

Dalziell, A. H., A. C. Maisey, R. D. Magrath, and J. A. Welbergen (2021). Male lyrebirds create a complex acoustic illusion of a mobbing flock during courtship and copulation. Current Biology:S0960982221002104.

DeGregorio, B. A., P. J. Wolff, and A. N. Rice (2021). Evaluating hydrophones for detecting underwater-calling frogs: implications for monitoring imperiled species. Herpetological Conservation and Biology 16:513–524.

Duporge, I., M. P. Spiegel, E. R. Thomson, T. Chapman, C. Lamberth, C. Pond, D. W. Macdonald, T. Wang, and H. Klinck (2021). Determination of optimal flight altitude to minimise acoustic drone disturbance to wildlife using species audiograms. Methods in Ecology and Evolution n/a.

Epp, M. V., M. E. H. Fournet, G. K. Silber, and G. K. Davoren (2021). Allopatric humpback whales of differing generations share call types between foraging and wintering grounds. Scientific Reports 11.

Epp, M. V., M. E. H. Fournet, and G. K. Davoren (2021). Humpback whale call repertoire on a northeastern Newfoundland foraging ground. Marine Mammal Science n/a.

Fournet, M. E. H., M. Silvestri, C. W. Clark, H. Clink, and A. N. Rice (2021). Limited vocal compensation for elevated ambient noise in bearded seals: implications for an industrializing Arctic Ocean. Proceedings of the Royal Society B 288.

Gabriele, C. M., D. W. Ponirakis, and H. Klinck (2021). Underwater Sound Levels in Glacier Bay During Reduced Vessel Traffic Due to the COVID-19 Pandemic. Frontiers in Marine Science 8.

Goldenberg, S. Z., A. K. Turkalo, P. H. Wrege, D. Hedwig, and G. Wittemyer (2021). Entry and aggregation at a Central African bai reveal social patterns in the elusive forest elephant Loxodonta cyclotis. Animal Behaviour 171:77–85.

Hedwig, D., J. Poole, and P. Granli (2021). Does social complexity drive vocal complexity? Insights from the two African elephant species. Animals 11:3071.

Hofstadter, D. F., N. F. Kryshak, M. W. Gabriel, C. M. Wood, G. M. Wengert, B. P. Dotters, K. N. Roberts, E. D. Fountain, K. G. Kelly, J. J. Keane, S. A. Whitmore, et al. (2021). High rates of anticoagulant rodenticide exposure in California Barred Owls are associated with the wildland–urban interface. Ornithological Applications.

Injaian, A. S., E. D. Lane, and H. Klinck (2021). Aircraft events correspond with vocal behavior in a passerine. Scientific Reports.

Kahl, S., C. M. Wood, M. Eibl, and H. Klinck (2021). BirdNET: A deep learning solution for avian diversity monitoring. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2021.101236

Kahl, S., T. Denton, H. Klinck, H. Glotin, H. Goëau, W. Vellinga, R. Planque, and A. Joly (2021). Overview of BirdCLEF 2021: Bird call identification in soundscape recordings. CLEF 2021.

Kavanagh, E., S. E. Street, F. O. Angwela, T. J. Bergman, M. B. Blaszczyk, L. M. Bolt, M. Briseño-Jaramillo, M. Brown, C. Chen-Kraus, Z. Clay, C. Coye, et al. (2021). Dominance style is a key predictor of vocal use and evolution across nonhuman primates. Royal Society Open Science 8:210873.

Kendall-Bar, J., N. Kendall-Bar, A. G. Forbes, G. McDonald, P. J. Ponganis, C. Williams, M. Horning, A. Hindle, H. Klinck, R. S. Beltran, A. S. Friedlaender, et al. (2021). Visualizing life in the deep: a creative pipeline for data-driven animations to facilitate marine mammal research, outreach, and conservation. IEEE VISAP.

Lester, J. D., L. Vigilant, P. Gratton, M. S. McCarthy, C. D. Barratt, P. Dieguez, A. Agbor, P. Álvarez-Varona, S. Angedakin, E. A. Ayimisin, E. Bailey, et al. (2021). Recent genetic connectivity and clinal variation in chimpanzees. Communications Biology 4:1–11.

Madhusudhana, S., Y. Shiu, H. Klinck, E. Fleishman, X. Liu, E.-M. Nosal, T. Helble, D. Cholewiak, D. Gillespie, A. Širović, and M. A. Roch (2021). Improve automatic detection of animal call sequences with temporal context. Journal of The Royal Society Interface 18:20210297.

Martin, S. B., B. J. Gaudet, H. Klinck, P. J. Dugan, J. L. Miksis-Olds, D. K. Mellinger, D. A. Mann, O. Boebel, C. C. Wilson, D. Ponirakis, and H. Moors-Murphy (2021). Hybrid millidecade spectra: A practical format for exchange of long-term ambient sound data. JASA Express Letters 1.

Miksis-Olds, J. L., P. J. Dugan, S. B. Martin, H. Klinck, D. K. Mellinger, D. A. Mann, D. W. Ponirakis, and O. Boebel (2021). Ocean Sound Analysis Software for Making Ambient Noise Trends Accessible (MANTA). Frontiers in Marine Science 8:1144.

Mirin, B. H., and H. Klinck (2021). Bird singing contests: Looking back on thirty years of research on a global conservation concern. Global Ecology and Conservation 30:e01812.

Odom, K. J., M. Araya‐Salas, J. L. Morano, R. A. Ligon, G. M. Leighton, C. C. Taff, A. H. Dalziell, A. C. Billings, R. R. Germain, M. Pardo, L. G. de Andrade, et al. (2021). Comparative bioacoustics: a roadmap for quantifying and comparing animal sounds across diverse taxa. Biological Reviews. https://doi.org/https://doi.org/10.1111/brv.12695

Pyć, C. D., J. Vallarta, A. N. Rice, D. G. Zeddies, E. E. Maxner, and S. Denes (2021). Vocal behavior of the endangered splendid toadfish and potential masking by anthropogenic noise. Conservation Science and Practice.

Reid, D. S., C. M. Wood, S. A. Whitmore, W. J. Berigan, J. J. Keane, S. C. Sawyer, P. A. Shaklee, H. A. Kramer, K. G. Kelly, A. Reiss, N. Kryshak, et al. (2021). Noisy neighbors and reticent residents: Distinguishing resident from non-resident individuals to improve passive acoustic monitoring. Global Ecology and Conservation 28:e01710.

Rycyk, A. M., C. Factheu, E. A. Ramos, B. A. Brady, M. Kikuchi, H. F. Nations, K. Kapfer, C. M. Hampton, E. R. Garcia, and A. Takoukam Kamla (2021). First characterization of vocalizations and passive acoustic monitoring of the vulnerable African manatee (Trichechus senegalensis). The Journal of the Acoustical Society of America 150:3028–3037.

Symes, L. B., T. Robillard, S. J. Martinson, J. Dong, C. E. Kernan, C. R. Miller, and H. M. ter Hofstede (2021). Daily Signaling Rate and the Duration of Sound per Signal are Negatively Related in Neotropical Forest Katydids. Integrative and Comparative Biology.

Vega-Hidalgo, Á., E. Flatt, A. Whitworth, and L. Symes (2021). Acoustic assessment of experimental reforestation in a Costa Rican rainforest. Ecological Indicators 133:108413.

Wood, C. M. (2021). Optimizing landscape-scale monitoring programmes to detect the effects of megafires. Diversity and Distributions. https://doi.org/10.1111/ddi.13308

Wood, C. M., S. Kahl, P. Chaon, M. Z. Peery, and H. Klinck (2021). Survey coverage, recording duration and community composition affect observed species richness in passive acoustic surveys. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13571

Wood, C. M., N. Kryshak, M. Gustafson, D. F. Hofstadter, B. Hobart, S. A. Whitmore, B. P. Dotters, K. N. Roberts, J. J. Keane, R. J. Gutierrez, and M. Z. Peery (2021). Density dependence influences competition and hybridization at an invasion front. Diversity and Distributions 27:901–912.

Wood, C. M., Zulla, C., Whitmore, S., Reid, D., Kramer, H. A., Keane, J. J., Sawyer, S. C., Roberts, K. N., Dotters, B. P., Klinck, H, Berigan, W., et al. (2021). Illuminating the Nocturnal Habits of Owls with Emerging Tagging Technologies. Wildlife Society Bulletin. https://doi.org/10.1002/wsb.1156